ChangeLog for: 2013-12-14 18:01:37

academic/EMBASSY: Updated for version 6.6.0.
academic/EMBOSS: Updated for version 6.6.0.
academic/PhyML: Updated for version 20131112.
academic/bowtie2: Added (A tool for aligning sequencing reads).
academic/bowtie: Updated for version 1.0.0.
academic/cistrome-CEAS: Added (Cis-regulatory Element Annotation).
academic/cistrome-MACS: Added (Model-based Analysis of ChIP-Seq).
academic/cufflinks: Added (reference-guided assembler for RNA-Seq).
academic/geoserver-control-flow: Added (request rate limitation)
academic/geoserver-pyramid: Added (pyramid data store support)
academic/mafft: Updated for version 7.130.
academic/mkDSSP: Updated for version 2.2.1.
academic/mrbayes: Updated for version 3.2.2.
academic/paml: Added (Phylogenetic Analysis by Maximum Likelihood).
academic/pamlX: Added (A GUI for PAML).
academic/primer3: Updated for version 2.3.6.
academic/samtools: Added (Sequence Alignment/Map Tools).
academic/t_coffee: Updated for version 10.00.r1613.
academic/tabix: Added (Generic indexer).
academic/topdraw: Added (A sketchpad for protein topology diagrams).
academic/tophat: Added (Splice junction mapper for RNA-Seq reads).
academic/ugene: Updated for version 1.13.0.
academic/vcftools: Added (A program designed for working with VCF).
audio/mpd: Added optional deps + New Maintainer.
audio/opus-tools: Added (utilities for opus)
audio/opus: Updated for version 1.1.
audio/opusfile: Added (opus decoding API)
desktop/awesome: Removed note from the README
desktop/copyq: Added (clipboard manager with advanced features).
desktop/murrine-themes: Updated for version 0.98.6.
desktop/screenfetch: Updated for version 3.2.2.
desktop/thunar-sendto-clamtk: Updated for version 0.04.
desktop/yawp: Updated for version 0.4.5.
development/Cython: Updated for version 0.19.2.
development/MySQL-python: Avoid downloading distribute during build.
development/acpica: Updated for version 20131115.
development/avra: Added (Atmel AVR Microcontrollers Assembler).
development/geany-plugins: New Maintainer.
development/mono-addins: Updated for version 20131127.
development/mono: Updated for version 3.2.3.
development/monodevelop-database: Updated for version 4.2.1.
development/monodevelop-debugger-gdb: Updated for version 4.2.1.
development/monodevelop: Updated for version 4.2.1.
development/trac: New maintainer.
games/Scorched3D: Updated for version 43.3d.
games/angband: Added license.
games/fortune_doctor_who: Added (quotes from Doctor Who).
games/supertux2: Updated for version 0.3.4.
games/xonotic: New maintainer, small clean up.
graphics/digikam: Cleanup + added additional optional deps.
graphics/goocanvas: Changed homepage.
graphics/luxblend25: Added (LuxRender's interface for Blender 2.6x).
graphics/luxrender: Added (rendering engine).
graphics/pinta: Updated for version 20131027.
graphics/shotwell: Added (Open source photo manager for GNOME)
libraries/SFCGAL: Added (C++ wrapper around CGAL).
libraries/dbus-sharp-glib: Added (a C# implementation of dbus-glib).
libraries/dbus-sharp: Added (C# implementation of D-Bus).
libraries/elementary: Added (toolkit set).
libraries/emotion: Added (video library).
libraries/ethumb: Added (thumbnail lib).
libraries/genshi: Updated for version 0.7, new maintainer.
libraries/goffice: Updated for version 0.10.9 + New Maintainer.
libraries/gtk-sharp: Updated for version 2.12.22.
libraries/lensfun: Switching to cmake, New maintainer.
libraries/libburn: Updated for version 1.3.4.
libraries/libgee1: Added (GObject-based interfaces and classes)
libraries/libgee: Updated for version 0.12.0.
libraries/libisoburn: Updated for version 1.3.4.
libraries/libisofs: Updated for version 1.3.4.
libraries/libquvi-scripts: Updated for version 0.4.21.
libraries/libskk: Update deps to libgee1.
libraries/libsuinput: Added (Thin userspace library)
libraries/libx86emu: Updated for version 1.4.
libraries/mysql-connector-python: Fix download link.
libraries/ndesk-dbus-glib: Removed (Replaced by dbus-sharp-glib).
libraries/ndesk-dbus: Removed (Replaced by dbus-sharp).
libraries/notify-sharp: Updated for version 0.4.1.
libraries/squish: Added (open-source DXT compression library).
misc/WhatPulse: Removed (no SBo maintainer).
misc/ibus-fbterm: Removed (no SBo maintainer)
misc/ibus-hangul: Removed (no SBo maintainer)
multimedia/guvcview: Updated for version 1.7.2.
multimedia/plexmediaserver: Added (media center server).
network/aoetools: Added (ATA Over Ethernet).
network/bitcoin: Updated for version 0.8.6.
network/cclive: Updated for version 0.7.16 + New Maintainer.
network/libquvi: Use Shared Libs + New Maintainer.
network/mangler: Removed (no SBo maintainer).
network/mumble: New Maintainer.
network/murmur: New Maintainer.
network/opensmtpd: Updated for version 5.4.1p1.
network/phpmyadmin: Updated for version 4.1.0.
network/quvi: New Maintainer.
network/weechat: Updated for version 0.4.2.
office/gnumeric: Updated for version 1.12.9.
office/pdfpc: Update deps to libgee1.
perl/perl-Scalar-List-Utils: Added (Scalar and List Subroutines).
perl/perl-Text-CSV: Added (Perl Text::CSV module).
perl/perl-Time-Piece: Added (Perl Time::Piece module).
python/psutil: Updated for version 1.2.1.
python/pygoocanvas: Changed homepage.
system/apache-tomcat: Fix location of tomcat-juli.jar.
system/clamtk: Updated for version 5.01.
system/eventlog: Updated for version 0.2.12+20120504+1700.
system/gparted: Updated for version 0.17.0.
system/hermit-font: Added (monospace font for programming).
system/hwinfo: Updated for version 20.1.
system/kc: Updated for version 2.3.2.
system/libscrypt: Added (library that implements scrypt()).
system/postgis: Add SFCGAL as an optional dependency.
system/rsyslog: Updated for version 7.4.6.
system/scrypt: Use SLKCFLAGS.
system/spl-solaris: Added (solaris kernel API for linux).
system/syslog-ng: Updated for version 3.5.2.
system/tagainijisho: Added (Japanese dictionary and kanji lookup).
system/terminology: Added (terminal emulator).
system/thermal_daemon: Added (Linux Thermal Daemon).
system/vagrant: Added (virtual development environments).
system/vbindiff: Added (visual binary diff).
system/virtualbox-addons: Updated for version 4.3.4.
system/virtualbox-kernel-addons: Updated for version 4.3.4.
system/virtualbox-kernel: Updated for version 4.3.4.
system/virtualbox: Updated for version 4.3.4.
system/xfsudo: Added (run graphical apps as root using sudo).
system/zfs-on-linux: Added (native linux port of ZFS).